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Yes, frozen pipes can cause a toilet to stop working correctly. If the pipes are frozen, water cannot flow, which can lead to two main problems. First, the supply line to the toilet tank may be frozen, which prevents the tank from refilling with water after you flush. Second, the drain pipe itself can freeze, blocking water from flushing away. As a temporary solution for a non-refilling tank, you can manually add water, but this is not a long-term fix. To clear a frozen drain pipe, you can try pouring warm water into the toilet bowl or tank and then flushing, as the warm water may help thaw the ice blockage. Ultimately, the best course of action is to unfreeze the affected pipes to restore your toilet to full functionality.

Brown stains in your toilet bowl are most likely limescale. Limescale happens from lime being left behind from hard water evaporating. Once dried out, the minerals also catch dirt and bacteria which eventually accumulate into the brown or blackish stain you see in your toilet. To remove thick and hard limescale from your toilet, use a mixture of vinegar, lemon juice, and baking soda, and scrub with a metal scrubbing brush.

A standard toilet flange should fit snugly into the outflow pipe and sit level with the subfloor. Installing a new one without first removing the old one will make it impossible to form a seal and keep the toilet bowl bolted securely in place. 

However, if you’re dealing with leakage or wobbling because you’ve installed a new type of bathroom tile (making the floor taller), you may be able to avoid fully replacing the flange by opting for a toilet flange extender. Extenders typically come in kits for easy DIY installation, fit over the existing flange, and bring the drain connection higher.

If you know the job is going to be extensive (and you don’t like surprises), hiring a Roto-Rooter specialist may make sense for you. You’ll know how much you’re going to pay right away.

That said, hiring the best plumber isn’t solely about price. If you've worked with a plumber you trust before or have a list of plumbing services you need tackled at your home, working with a plumber might be a better choice for you.